The cause of anoxic bottom waters is fairly simple: the organic matter produced by phytoplankton at the surface of the ocean (in the euphotic zone) sinks to the bottom (the benthic zone), where it is subject to breakdown by the action of bacteria, a process known as bacterial respiration. The problem is, while phytoplankton use carbon dioxide and produce oxygen during photosynthesis, bacteria use oxygen and give off carbon dioxide during respiration. The oxygen used by bacteria is the oxygen dissolved in the water, and that’s the same oxygen that all of the other oxygen-respiring animals on the bottom (crabs, clams, shrimp, and a host of mud-loving creatures) and swimming in the water (zooplankton, fish) require for life to continue.
The "creeping dead zones" are areas in the ocean where it appears that phytoplankton productivity has been enhanced, or natural water flow has been restricted, leading to increasing bottom water anoxia. If phytoplankton productivity is enhanced, more organic matter is produced, more organic matter sinks to the bottom and is respired by bacteria, and thus more oxygen is consumed. If water flow is restricted, the natural refreshing flow of oxic waters (water with normal dissolved oxygen concentrations) is reduced, so that the remaining oxygen is depleted faster.
Many of the areas where increasing bottom water anoxia has recently been observed are near the mouths of major river systems.
The apparent cause of the creeping dead zones is agriculture, specifically fertilizer. While fertilizer is necessary to foster bumper agricultural crops, it also runs off the fields into the streams and rivers of a watershed. When the fertilizer reaches the ocean, it just becomes more nutrients for the phytoplankton, so they do what they do best: they grow and multiply. Which leads to more organic matter reaching the bottom, more bacterial respiration, and more anoxic bottom water.
The Benguela ecosystem lies off the coast of Namibia. It exists in waters only 120 metres deep that used to be a rich sardine fishery, but in the 1960s the sardine population crashed because of overfishing and environmental factors, and the region was invaded by algal blooms and swarms of jellyfish.When the algae die they sink to the bottom and decay, releasing large quantities of the poisonous gas hydrogen sulphide. Nevertheless, local fish called bearded gobies have flourished.